;;; PLT Scheme Science Collection ;;; random-distributions/gamma.ss ;;; Copyright (c) 2004-2006 M. Douglas Williams ;;; ;;; This library is free software; you can redistribute it and/or ;;; modify it under the terms of the GNU Lesser General Public ;;; License as published by the Free Software Foundation; either ;;; version 2.1 of the License, or (at your option) any later version. ;;; ;;; This library is distributed in the hope that it will be useful, ;;; but WITHOUT ANY WARRANTY; without even the implied warranty of ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ;;; Lesser General Public License for more details. ;;; ;;; You should have received a copy of the GNU Lesser General Public ;;; License along with this library; if not, write to the Free ;;; Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA ;;; 02111-1307 USA. ;;; ;;; ------------------------------------------------------------------- ;;; ;;; This module implements the gamma distribution. It is based on the ;;; Random Number Distributions in the GNU Scientific Library. ;;; ;;; Version Date Description ;;; 1.0.0 09/28/04 Marked as ready for Release 1.0. Added ;;; contracts for functions. (Doug Williams) ;;; 1.1.0 02/09/06 Added cdf. (Doug Williams) (module gamma mzscheme (require (lib "contract.ss")) (provide/contract (random-gamma (case-> (-> random-source? (>/c 0.0) real? (>=/c 0.0)) (-> (>/c 0.0) real? (>=/c 0.0)))) (random-gamma-int (-> random-source? natural-number/c (>=/c 0.0))) (gamma-pdf (-> real? (>/c 0.0) real? (>=/c 0.0))) (gamma-cdf (-> real? (>/c 0.0) real? (real-in 0.0 1.0)))) (require "../machine.ss") (require "../math.ss") (require "../random-source.ss") (require "../special-functions/gamma.ss") ;; random-gamma: random-source x real x real -> real ;; random-gamma: real x real -> real ;; ;; This function returns a random variate from the gamma ;; distribution with parameters a and b. (define random-gamma (case-lambda ((r a b) (let ((na (inexact->exact (floor a)))) (cond ((= a na) (* b (random-gamma-int r na))) ((= na 0.0) (* b (random-gamma-frac r a))) (else (* b (+ (random-gamma-int r na) (random-gamma-frac r (- a na)))))))) ((a b) (random-gamma (current-random-source) a b)))) ;; random-gamma-int: random-source x integer -> real (define (random-gamma-int r na) (if (< na 12) ;; Note: for 12 iterations we are safe against underflow, ;; since the smallest positive random number is O(2^-32). ;; This means the smallest product is 2^(12*32) = 10^-116, ;; which is in the range of double precision. (let ((prod 1.0)) (do ((i 0 (+ i 1))) ((= i na) (- (log prod))) (printf "r = ~a~n" r) (set! prod (* prod (random-uniform r))))) (random-gamma-large r na))) ;; random-gamma-large: random-source x real -> real (define (random-gamma-large r a) (let ((sqa (sqrt (- (* 2.0 a) 1.0))) (x 0.0) (y 0.0) (v 0.0)) (let loop1 () (let loop2 () (set! y (tan (* pi (random-uniform r)))) (set! x (+ (* sqa y) a -1)) (if (<= x 0.0) (loop2))) (set! v (random-uniform r)) (if (> v (- (* (+ 1.0 (* y y)) (exp (- (* (- a 1.0) (log (/ x (- a 1.0)))) (* sqa y)))))) (loop1))) x)) ;; random-gamma-frac: random-source x real -> real (define (random-gamma-frac r a) (let ((p (/ e (+ a e))) (q 0.0) (x 0.0) (u 0.0) (v 0.0)) (let loop () (set! u (random-uniform r)) (set! v (random-uniform r)) (if (< u p) (begin (set! x (exp (* (/ 1.0 a) (log v)))) (set! q (exp (- x)))) (begin (set! x (- 1.0 (log v))) (set! q (exp (* (- a 1.0) (log x)))))) (if (>= (random-uniform r) q) (loop))) x)) ;; gamma-pdf: real x real x real -> real ;; ;; This function computes the probability density p(x) for a gamma ;; function with parameters a and b. (define (gamma-pdf x a b) (cond ((< x 0) 0.0) ((= x 0.0) (if (= a 1.0) (/ 1.0 b) 0.0)) ((= a 1.0) (exp (/ (/ (- x) b) b))) (else (/ (exp (+ (* (- a 1.0) (log (/ x b))) (- (/ x b)) (- (lngamma a)))) b)))) ;; cdf (define LARGE-A 85) (define (norm-arg x a) (let ((t 0.0) (arg (+ (x (/ 1.0 3.0) (- a) (- (/ 0.02 a))))) (u (/ (- a 0.5) x))) (cond ((< (abs (- u 1.0)) double-epsilon) (set! t 0.0)) ((< (abs u) double-epsilon) (set! t 1.0)) ((> u 0.0) (let ((v (- 1.0 u))) (set! t (/ (+ 1.0 (- (* u u)) (* 2.0 u (log u))) (* v v))))) (else (set! t +nan.0))) (* arg (sqrt (/ (+ 1.0 t) x))))) ;; Wrapper for functions that do the work. (define (gamma-cdf x a b) (cond ((< x 0.0) 0.0) (else (let ((y (/ x b))) (gamma-inc-P a y))))) )